{
  "_id": "6a1ed855b401979e7340f047",
  "Package": "nmathresh",
  "Type": "Package",
  "Title": "Thresholds and Invariant Intervals for Network Meta-Analysis",
  "Version": "0.1.6.9000",
  "Authors@R": "person(\"David\", \"Phillippo\", email=\"david.phillippo@bristol.ac.uk\", role=c(\"aut\",\"cre\"))",
  "Description": "Calculation and presentation of decision-invariant bias\nadjustment thresholds and intervals for Network Meta-Analysis,\nas described by Phillippo et al. (2018)\n<doi:10.1111/rssa.12341>. These describe the smallest changes\nto the data that would result in a change of decision.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "TRUE",
  "RoxygenNote": "7.1.0",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/dmphillippo/nmathresh",
  "BugReports": "https://github.com/dmphillippo/nmathresh/issues",
  "Repository": "https://dmphillippo.r-universe.dev",
  "Date/Publication": "2026-04-20 09:11:37 UTC",
  "RemoteUrl": "https://github.com/dmphillippo/nmathresh",
  "RemoteRef": "HEAD",
  "RemoteSha": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-20 09:49:11 UTC",
    "User": "root"
  },
  "Author": "David Phillippo [aut, cre]",
  "Maintainer": "David Phillippo <david.phillippo@bristol.ac.uk>",
  "MD5sum": "b361babe9e94ae6d6e8fbbefcbc2201e",
  "_user": "dmphillippo",
  "_type": "src",
  "_file": "nmathresh_0.1.6.9000.tar.gz",
  "_fileid": "f462e2366a17d8b885ac3e16793cc8066f33dffe93da164b2d65f942c30d6752",
  "_filesize": 9823111,
  "_sha256": "f462e2366a17d8b885ac3e16793cc8066f33dffe93da164b2d65f942c30d6752",
  "_created": "2026-05-20T09:49:11.000Z",
  "_published": "2026-06-02T13:19:17.035Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79079751549,
      "time": 152,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7106767765"
    },
    {
      "job": 79079752004,
      "time": 142,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7106764389"
    },
    {
      "job": 79079751027,
      "time": 109,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7106752899"
    },
    {
      "job": 79079751312,
      "time": 103,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7106749695"
    },
    {
      "job": 79079750252,
      "time": 197,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7106711519"
    },
    {
      "job": 79079750153,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7358780601"
    },
    {
      "job": 79079751436,
      "time": 108,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7106752078"
    },
    {
      "job": 79079752351,
      "time": 104,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7106750556"
    },
    {
      "job": 79079752232,
      "time": 96,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7106747700"
    }
  ],
  "_buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/dmphillippo/nmathresh",
  "_commit": {
    "id": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
    "author": "David Phillippo <david.phillippo@bristol.ac.uk>",
    "committer": "David Phillippo <david.phillippo@bristol.ac.uk>",
    "message": "Add r-cmd-check github action\n",
    "time": 1776676297
  },
  "_maintainer": {
    "name": "David Phillippo",
    "email": "david.phillippo@bristol.ac.uk",
    "login": "dmphillippo",
    "description": "",
    "uuid": 22062351
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "nnls",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "gtable",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "coda",
      "role": "Suggests"
    }
  ],
  "_owner": "dmphillippo",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-17",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "dmphillippo",
      "count": 164,
      "uuid": 22062351
    }
  ],
  "_userbio": {
    "uuid": 22062351,
    "type": "user",
    "name": "David Phillippo"
  },
  "_downloads": {
    "count": 243,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/nmathresh"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/dmphillippo/nmathresh",
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/nmathresh.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dmphillippo/nmathresh",
  "_realowner": "dmphillippo",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2018-01-26"
    },
    {
      "version": "0.1.2",
      "date": "2018-02-15"
    },
    {
      "version": "0.1.3",
      "date": "2018-03-29"
    },
    {
      "version": "0.1.4",
      "date": "2019-01-07"
    },
    {
      "version": "0.1.5",
      "date": "2020-03-19"
    },
    {
      "version": "0.1.6",
      "date": "2020-06-11"
    }
  ],
  "_exports": [
    "d_ab2i",
    "d_i2ab",
    "get.int",
    "nma_thresh",
    "recon_vcov",
    "thresh_2d",
    "thresh_forest"
  ],
  "_datasets": [
    {
      "name": "SocAnx.post.cov",
      "title": "Posterior covariance matrix from Social Anxiety NMA",
      "object": "SocAnx.post.cov",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "d[2]",
        "d[3]",
        "d[4]",
        "d[5]",
        "d[6]",
        "d[7]",
        "d[8]",
        "d[9]",
        "d[10]",
        "d[11]",
        "d[12]",
        "d[13]",
        "d[14]",
        "d[15]",
        "d[16]",
        "d[17]",
        "d[18]",
        "d[19]",
        "d[20]",
        "d[21]",
        "d[22]",
        "d[23]",
        "d[24]",
        "d[25]",
        "d[26]",
        "d[27]",
        "d[28]",
        "d[29]",
        "d[30]",
        "d[31]",
        "d[32]",
        "d[33]",
        "d[34]",
        "d[35]",
        "d[36]",
        "d[37]",
        "d[38]",
        "d[39]",
        "d[40]",
        "d[41]",
        "delta[1,2]",
        "delta[2,2]",
        "delta[3,2]",
        "delta[4,2]",
        "delta[5,2]",
        "delta[6,2]",
        "delta[7,2]",
        "delta[8,2]",
        "delta[9,2]",
        "delta[10,2]",
        "delta[11,2]",
        "delta[12,2]",
        "delta[13,2]",
        "delta[14,2]",
        "delta[15,2]",
        "delta[16,2]",
        "delta[17,2]",
        "delta[18,2]",
        "delta[19,2]",
        "delta[20,2]",
        "delta[21,2]",
        "delta[22,2]",
        "delta[23,2]",
        "delta[24,2]",
        "delta[25,2]",
        "delta[26,2]",
        "delta[27,2]",
        "delta[28,2]",
        "delta[29,2]",
        "delta[30,2]",
        "delta[31,2]",
        "delta[32,2]",
        "delta[33,2]",
        "delta[34,2]",
        "delta[35,2]",
        "delta[36,2]",
        "delta[37,2]",
        "delta[38,2]",
        "delta[39,2]",
        "delta[40,2]",
        "delta[41,2]",
        "delta[42,2]",
        "delta[43,2]",
        "delta[44,2]",
        "delta[45,2]",
        "delta[46,2]",
        "delta[47,2]",
        "delta[48,2]",
        "delta[49,2]",
        "delta[50,2]",
        "delta[51,2]",
        "delta[52,2]",
        "delta[53,2]",
        "delta[54,2]",
        "delta[55,2]",
        "delta[56,2]",
        "delta[57,2]",
        "delta[58,2]",
        "delta[59,2]",
        "delta[60,2]",
        "delta[61,2]",
        "delta[62,2]",
        "delta[63,2]",
        "delta[64,2]",
        "delta[65,2]",
        "delta[66,2]",
        "delta[66,3]",
        "delta[67,2]",
        "delta[67,3]",
        "delta[68,2]",
        "delta[68,3]",
        "delta[69,2]",
        "delta[69,3]",
        "delta[70,2]",
        "delta[70,3]",
        "delta[71,2]",
        "delta[71,3]",
        "delta[72,2]",
        "delta[72,3]",
        "delta[73,2]",
        "delta[73,3]",
        "delta[74,2]",
        "delta[74,3]",
        "delta[75,2]",
        "delta[75,3]",
        "delta[76,2]",
        "delta[76,3]",
        "delta[77,2]",
        "delta[77,3]",
        "delta[78,2]",
        "delta[78,3]",
        "delta[79,2]",
        "delta[79,3]",
        "delta[80,2]",
        "delta[80,3]",
        "delta[81,2]",
        "delta[81,3]",
        "delta[82,2]",
        "delta[82,3]",
        "delta[83,2]",
        "delta[83,3]",
        "delta[84,2]",
        "delta[84,3]",
        "delta[85,2]",
        "delta[85,3]",
        "delta[86,2]",
        "delta[86,3]",
        "delta[87,2]",
        "delta[87,3]",
        "delta[88,2]",
        "delta[88,3]",
        "delta[89,2]",
        "delta[89,3]",
        "delta[90,2]",
        "delta[90,3]",
        "delta[91,2]",
        "delta[91,3]",
        "delta[92,2]",
        "delta[92,3]",
        "delta[92,4]",
        "delta[93,2]",
        "delta[93,3]",
        "delta[93,4]",
        "delta[94,2]",
        "delta[94,3]",
        "delta[94,4]",
        "delta[95,2]",
        "delta[95,3]",
        "delta[95,4]",
        "delta[96,2]",
        "delta[96,3]",
        "delta[96,4]",
        "delta[97,2]",
        "delta[97,3]",
        "delta[97,4]",
        "delta[98,2]",
        "delta[98,3]",
        "delta[98,4]",
        "delta[99,2]",
        "delta[99,3]",
        "delta[99,4]",
        "delta[99,5]",
        "delta[100,2]",
        "delta[100,3]",
        "delta[100,4]",
        "delta[100,5]"
      ],
      "rows": 186,
      "table": true,
      "tojson": true
    },
    {
      "name": "SocAnx.post.summary",
      "title": "Posterior summary from Social Anxiety NMA",
      "object": "SocAnx.post.summary",
      "class": [
        "summary.mcmc"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "Thrombo.post.cov",
      "title": "Posterior covariance matrix from Thrombolytics NMA",
      "object": "Thrombo.post.cov",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "dd[1,2]",
        "dd[1,3]",
        "dd[1,4]",
        "dd[1,5]",
        "dd[1,6]"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "Thrombo.post.summary",
      "title": "Posterior summary from Thrombolytics NMA",
      "object": "Thrombo.post.summary",
      "class": [
        "summary.mcmc"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "d_ab2i",
      "title": "Convert contrast indexing",
      "topics": [
        "d_ab2i",
        "d_i2ab"
      ]
    },
    {
      "page": "get.int",
      "title": "Get thresholds from U matrix",
      "topics": [
        "get.int"
      ]
    },
    {
      "page": "nma_thresh",
      "title": "Calculate thresholds and invariant intervals",
      "topics": [
        "nma_thresh"
      ]
    },
    {
      "page": "recon_vcov",
      "title": "Reconstruct likelihood covariance matrix",
      "topics": [
        "recon_vcov"
      ]
    },
    {
      "page": "SocAnx.post.cov",
      "title": "Posterior covariance matrix from Social Anxiety NMA",
      "topics": [
        "SocAnx.post.cov"
      ]
    },
    {
      "page": "SocAnx.post.summary",
      "title": "Posterior summary from Social Anxiety NMA",
      "topics": [
        "SocAnx.post.summary"
      ]
    },
    {
      "page": "thresh_2d",
      "title": "Producing two-dimensional invariant regions",
      "topics": [
        "thresh_2d"
      ]
    },
    {
      "page": "thresh_forest",
      "title": "Producing threshold forest plots",
      "topics": [
        "thresh_forest"
      ]
    },
    {
      "page": "thresh-class",
      "title": "The thresh class",
      "topics": [
        "thresh-class"
      ]
    },
    {
      "page": "Thrombo.post.cov",
      "title": "Posterior covariance matrix from Thrombolytics NMA",
      "topics": [
        "Thrombo.post.cov"
      ]
    },
    {
      "page": "Thrombo.post.summary",
      "title": "Posterior summary from Thrombolytics NMA",
      "topics": [
        "Thrombo.post.summary"
      ]
    }
  ],
  "_readme": "https://github.com/dmphillippo/nmathresh/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "Matrix",
    "nnls",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "Examples.Rmd",
      "filename": "Examples.html",
      "title": "Examples: bias adjustment thresholds for network meta-analysis",
      "author": "David Phillippo, University of Bristol",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Thrombolytics",
        "Study level threshold analysis",
        "Thresholds for multiple biases",
        "Contrast level threshold analysis",
        "Social Anxiety",
        "More complex analyses",
        "References",
        "Appendix: WinBUGS code and reading CODA output",
        "Thrombolytics example",
        "Social anxiety example"
      ],
      "created": "2016-12-01 16:46:56",
      "modified": "2019-01-07 17:13:24",
      "commits": 10
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "nmathresh",
  "_universes": [
    "dmphillippo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:51:24.000Z",
      "distro": "noble",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "b6b781d9bd9554d04bac401e6aae57604ba50c6acb10fac78523c9aedd77c1e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:51:16.000Z",
      "distro": "noble",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "bbf9fdd17020162201cf35b0dbc248322956c05da3a55c2f1338d50378969c12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:50:54.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "3ec48f88e13e38444e49a0c4bb0e8734833dd031d3acd257f95299b807a0300a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:50:49.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "512928743d00aa016f30f741a25d4bd686caf54810856b15f073a0be09303c06",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:50:34.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "5b4e0abbf170fdf2b3b0d78e3eaf1173bbf2130dae1501493596dd22f551073c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:50:33.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "b7d81f7160855ec85659d8d6b90688133e591e67e944f05f47ee1b57b1a81e47",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.6.9000",
      "date": "2026-05-20T09:50:29.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "b271f92c80b896edb45744a21abbc2cae2659384339e54dca6f3b2cd0e8eccce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.6.9000",
      "date": "2026-06-02T13:18:16.000Z",
      "commit": "7e2716b977c81fad90d9aad0f5dc9a280da524f6",
      "fileid": "531636d37b1396b24d81cd54e5aa5f60da6ec90a5f3678d1e6d967603ffa7f34",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dmphillippo/actions/runs/26154680610"
    }
  ]
}